species:   Clros
pid:       PID2224
parent:    cro-mir-18
paralog:   
locus:     CADEHS020000003.2:1621040-1621076
matures:   ['UCUUCCGUAGUAUAGUG', 'CUCUUGCUGGGUUAGGAA']
srr:       ERR5950930
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950930.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950930.cram CADEHS020000003.2:1621040-1621076

75760 out of bounds
4087 alignments
4087 proper strand
4072 stranded perfect matches

****************** ******************
ACUCUUGCUGGGUUAGGAAUUCUUCCGUAGUAUAGUG
(((..(((((.(..((.....))..).))))).))).
--------------------UCUUCCGUAGUAUAGUG l=17 a=433 c
-CUCUUGCUGGGUUAGGAA------------------ l=18 a=0 c*
---------------------CUUCCGUAGUAUAGUG l=16 a=2908 ma
-CUCUUGCUGGGUUAGGA------------------- l=17 a=0 ma*

------------------------CCGUAGUAUAG-- l=11 a=2 
------------------------CCGUAGUAUAGUG l=13 a=79 
-----------------------UCCGUAGUAUAG-- l=12 a=6 
-----------------------UCCGUAGUAUAGUG l=14 a=88 
----------------------UUCCGUAGUAUA--- l=12 a=1 
----------------------UUCCGUAGUAUAG-- l=13 a=19 
----------------------UUCCGUAGUAUAGUG l=15 a=50 
----------------------cUCCGUAGUAUAGUG l=15 a=1 
---------------------CUUCCGUAGUAUA--- l=13 a=12 
---------------------CUUCCGUAGUAUAG-- l=14 a=261 
---------------------CUUCCGUAGUAUAGU- l=15 a=21 
---------------------CUUCCGUAGUAUAGUG l=16 a=2908 (ma)
---------------------CUUCCGUnGUAUAGUG l=16 a=1 
---------------------CUUCCGaAGUAUAGUG l=16 a=1 
---------------------CUUCCGUAGUAaAGUG l=16 a=1 
---------------------CUgCCGUAGUAUAGUG l=16 a=1 
---------------------CUUCCGUAGUAUAGcG l=16 a=1 
---------------------CaUCCGUAGUAUAGUG l=16 a=2 
---------------------CUUCCGUgGUAUAGUG l=16 a=1 
--------------------UCUUCCGUAGU------ l=11 a=3 
--------------------UCUUCCGUAGUAU---- l=13 a=6 
--------------------UCUUCCGUAGUAUA--- l=14 a=13 
--------------------UCUUCCGUAGUAUAG-- l=15 a=128 
--------------------UCUUCCGUAGUAUAGU- l=16 a=7 
--------------------UCUUCCGUAGUAUAGUG l=17 a=433 (c)
--------------------UCUUCCGUAGcAUAGUG l=17 a=1 
--------UuGGUUAGGAAUUC--------------- l=14 a=2 
-------CUGGGUUAGGA------------------- l=11 a=1 
-----UGCUGGGUUAGGAAUa---------------- l=16 a=2 
-----UGCUGGGUUAGGAAUUCUUCCGUAGU------ l=26 a=2 
----UUGCUGGGUUAGGA------------------- l=14 a=2 
----UUGCUGGGUUAGGAAUUCUU------------- l=20 a=1 
---CUUGCUGGGUUAGG-------------------- l=14 a=3 
--UCUUGCUGGGUUA---------------------- l=13 a=1 
--UCUUGCUGGGUUAG--------------------- l=14 a=3 
--UCUUGCUGGGUUAGGAAU----------------- l=18 a=4 
--UCUUGCUGGGUUAGGAAUa---------------- l=19 a=1 
-CUCUUGCUGGGUUAGG-------------------- l=16 a=1 
-CUCUUGCUGGGUUAGGAAU----------------- l=19 a=1 
-CUCUUGCUGGGUUAGGAAUUCUUCCGUAGUA----- l=31 a=1 
ACUCUUGCUGGG------------------------- l=12 a=4 
ACUCUUGCUGGGUUAG--------------------- l=16 a=1 
ACUCUUGCUGGGUUAGG-------------------- l=17 a=8 
ACUCUUGCUGGGUUAGGAAU----------------- l=20 a=1 
ACUCUUGCUGGGUUAGGAAUUCUUC------------ l=25 a=1 

mb-01110
ax-1001101
ku-11
ss-101011101110
fn-111
